This is a comparison between some of the well known web scanners (Acuentix, HP WebInspect, IBM Rational Appscan). Do not depend on it totally, as there are some concerns about the methodology, however it is a good starting point.
Acuentix seems to be the best, I personally like it.
http://anantasec.blogspot.com/2009/01/web-vulnerability-scanners-comparison.html
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